Changelog

Entries are in the order newest first, date format is DD.MM.YYYY:

• 11.04.2010: (Mario) Collected many new test data sets on the server, see server_datasets
• 11.04.2010: (Mario) Closed as invalid: HDF5 test testWriteReadStringDataSet fails on Linux
• 29.01.2010, r3336: (Mario) Many updates and improvements to libBlitzBioFormats and its compile system

• 29.12.2009: (Mario) Fixed issue: re-design the "Advanced Settings" dialog to behave better

• 12.02.2010: (Niko) Added versioning information for Windows-binary (rcfile) to buildscript.
• 30.01.2010: (Mario) Windows compile works with CONFIG+=“tools” (Except for dependency generation).
• 30.01.2010: (Mario) Add text-based project file support
• 30.01.2010: (Mario) Outdating request to “make CSV file writing work again”, superseeded by new project files as text files.
• 30.01.2010: (Mario) Updated Wiki engine on the website to dokuwiki-2009-12-25c.tgz “Lemming”
• 18.01.2010: (Mario) updated the Wiki documentation, especially the build-instructions

• 14.01.2010, r3286: (Mario) libBlitzBioFormats test system with user interface
• 01.01.2010: (Mario) Created Camtasia movies with video tutorial.
• 01.01.2010: (Niko, Mario) Compiling xuvtools with the MS Compiler now works on Win64
• 29.12.2009: (Mario) Fixed issue: thumbnails should not use full path in project files
• 11.12.2009: (Niko) Fixed issue: number of tiles is not updated in layout-tool
• 11.12.2009: (Niko) Fixed issue: progress bar value of "zero" confuses users
• 11.12.2009: (Niko) Fixed issue: remove html formatting from GUI log messages
• 08.12.2009: (Niko) Fixed issue: expected file-size for overlay is calculated wrong

• 26.11.2009: (Niko) Find a portable way to automatically set current svn revision as XuvTools-version at compile time.
• 26.11.2009: (Mario) Fixed issue: cannot load files in HDF5-format anymore win64
• 26.11.2009: (Mario) Fixed issue: re-implement the logging-facility
• 26.11.2009: (Mario) Fixed issue: most likely the new naming-scheme breaks compilation on windows
• 26.11.2009: (Mario) Fixed issue: xuvtools 1.6.0: file size written in Imaris files is wrong
• 26.11.2009: (Mario) Fixed issue: When saving the output Imaris file, all resolution levels should be written
• 26.11.2009: (Mario) Fixed issue: xuvtools crash after wrongly computed overlay size
• 26.11.2009: (Mario) Fixed issue: The progress bar does not update anymore
• 26.11.2009: (Mario) Fixed issue: [wishlist] make calculation of thumbnails multithreaded
• 26.11.2009: (Mario) Fixed issue: running the stitcher on windows creates spurious directories
• 26.11.2009: (Mario) Fixed issue: [wishlist] set logfile and logging verbosity without restart
• 26.11.2009: (Mario) Fixed issue: RE-saving a project takes ages compared to first-time saving GUI is blocked
• 26.11.2009: (Mario) Fixed issue: [wishlist] add possibility to store thumbnails
• 26.11.2009: (Mario) Fixed issue: XuvTools create a tile per plane from STK files
• 26.11.2009: (Mario) Fixed issue: fails to display *some* LSM files
• 26.11.2009: (Mario) Fixed issue: Saving a project as NetCDF file *.nc crashes the stitcher

• 22.10.2009: (Mario) Fixed a bug when writing Imaris Thumbnails (still black, but now with correct RGBA colors )
• 17.10.2009: (Mario) Write logfile ourselves rather than using output redirection, so we can close the file and i.e. attach to email/upload/compress/…
• 17.10.2009: (Mario) Write compressed logfiles, using libz or similar
• 07.10.2009: (Niko) Fix the build-dependencies in the generated .sln file, so the 'gen*' stuff is built first
• 05.10.2009: (Mario) Set a common header (replacing the diverse copyright) in all source code files.
• 20.09.2009: (Mario) Added a new library dummy for libBlitzBioFormats
• 01.08.2009: (Mario) Closed as invalid: Saving a project as NetCDF file (*.nc) crashes the stitcher (won't fix)
• 01.08.2009: (Aaron) Remove NetCDF as a possible format for saving project files.

• 07.07.2009: (Niko) Fixed issue: xuvtools: [wishlist] add "save as" functionality
• 07.07.2009: (Niko) Fixed issue: xuvtools: [wishlist] log-messages when saving a project, added more status-messages and additional shortcut-tooltips
• 07.07.2009: (Aaron) Added a dialog to change the proxy settings (enabled if built against Qt 4.5.0 or newer).
• 07.07.2009: (Niko) Show keyboard-shortcuts in mouseover-tooltips, removed 'close' button from workflow-editor
• 06.07.2009: (Niko) FTP service for registered users is ready.

• 06.07.2009: (Mario) Fixed issue: libGenFile: read Metamorph 'Z plane position' attribute
• 04.07.2009: (Mario) Collect problematic data sets and bugreports on ftp-space
• 04.07.2009: (Mario) Collect all currently known bugs in LMB bugtracker, including reference to data sets
• 03.07.2009: (Niko) renamed buttons in the "advanced parameters" dialog
• 29.06.2009: (Aaron) The stitcher can now upload log files to our ftp server for debugging.
• 28.06.2009: (Mario) xuvtools: stitching fails for lsm dataset in exhaustive search (worksforme)
• 28.06.2009: (Mario) libGenFile: read Metamorph 'Z voxel size' attribute
• 26.06.2009: (Niko) Prepared the server to receive uploads of bugreports, logfiles and user-data.
• 26.06.2009: (Aaron) Extended the sorting of file names to use the numerical index if present. Otherwise the standard alphanumerical sorting is used.
• 26.06.2009: (Aaron/Niko) xuvtools: compilation on Linux32 fails (fixed)
• 23.06.2009: (Mario) Moved xuvtools.org to a new webserver (finally, 1.5TB of Hard Disk space for user data!)
• 19.06.2009: (Aaron) Added classes to import coordinates from Metamorph Stage Memory List files and raw coordinate files
• 17.06.2009: (Aaron) XuvTools stitches with bad score when not using full search invalid
• 17.06.2009: (Aaron) Fixed a bug that would not let the user deselect a tile from a group
• 17.06.2009: (Aaron) Added key bindings to DEL(ete) tiles/stacks and to move tiles in the scene via arrow keys
• 16.06.2009: (Mario) fixed a bug (crash) if verbosity > 10 and stage coordinates available
• 12.06.2006: (Aaron) Added context menu to InteractivePanel to save snapshots of view/scene
• 06.06.2009: (Mario) Data set L21_P30_nr1e_dorsal_I.ims crashes stitcher while loading invalid.
• 06.06.2009: (Mario) Read the color information from LSM files
• 06.06.2009: (Mario) Leave out color information from map if none available in file.
• 06.06.2009: (Aaron) Show tiles on screen in the color information from the file.
• 06.06.2009: (Mario) Crash while stitching in cutoutPadded(), bug report by AP fixed in svn 2714.
• 06.06.2009: (Mario) Crash when data set does not have enough Z-levels fixed in svn 2714.
• 06.06.2009: (Mario) Estimating absolute positions goes wrong after (correct) stitching fixed in svn 2713.
• 04.06.2009: (Aaron) Added initial support for updating log files to the xuvtools.org ftp server.
• 28.05.2009: (Aaron) Significant enhancements (and several bug fixes) to the graphical user interface
• 24.05.2009: (Mario) Put a timeline estimate for ToDo's on website
• 24.05.2009: (Mario) Removed LMB XuvTools website, linked to http://xuvtools.org
• 23.05.2009: (Mario) Add all missing documentation from LMB XuvTools website
• 22.05.2009: (Mario) Updated hdf5 library to hdf5-1.8.3
• 01.05.2009: (Mario) Fixed a bug in Imaris file format reader (parsing string values)
• 01.05.2009: (Mario) Fixed two bugs in Zeiss LSM file format reader (ignore broken ColorMap)
• 01.05.2009: (Mario) Increase stability of releases:
  • 01.05.2009: (Mario) Re-enable automated tests for libBlitzHDF5 and libBlitzFFTW in qmake-project
• 30.04.2009: (Mario) Simplify compile process for all architectures
• 30.04.2009: (Mario) Add explicit template instantiation for faster compilation.
• 20.04.2009: (Mario) Set up xuvtools.org website:
  • 20.04.2009: (Mario) build instructions for all platforms
  • 20.04.2009: (Mario) provide documentation base for developers
• 10.04.2009: (Mario) Update FFTW library to 3.2.1 for all platforms.
• 28.03.2009: (Mario) Simplify compile process for all architectures: removed automake
• 28.03.2009: (Mario) finished gcc-4.3 support.
• 25.03.2009: (Mario) Synchronize XUVTOOLS with current LMBSOFT sources.
• 05.03.2009: (Mario) Fixed a Bug in libBlitzHDF5: Chunking of data sets with thickness 1 could go wrong, so writing could fail due to excessive chunk size.
• 20.02.2009: (Mario) Basic setup for new website
• 16.02.2009: (Benjamin) Finished bugfixing bleaching correction based on linear parameters
• 15.02.2009: (Aaron) Integrated GUI controls for bleaching correction
• 13.02.2009: (Mario) Write qmake project files for all libBlitzXXXX
  • Object files go in $(XUVTEMP)/obj_tmp/[PROJECT]
  • Target files go in $(XUVDEST)/{lib,bin,include}
• 10.02.2009: (Mario) All object files should be done in XUVTEMP, not XUVSRC
• 05.02.2009: (Mario) One by one, add the source directories to Eclipse. Start with xuvtools.
• 03.02.2009: (Mario) Remove all earlier compiled binaries
• 01.02.2009: (Mario) Create separate imgcnv project from the extsrc/ of libGenFile
• 01.01.2009: (Mario) Use the latest blitz++ from CVS head, and update to 64bit