http://www.xuvtools.org/ 2010-09-05T13:26:03+02:00 http://www.xuvtools.org/ http://www.xuvtools.org/lib/images/favicon.ico text/html 2010-03-12T11:43:12+02:00 http://www.xuvtools.org/doku.php?id=contact&rev=1268390592&do=diff XuvTools is a joint development of three institutes, all located around the beautiful region 'Dreiländereck', at the borders of Germany, Switzerland and France. Originally, development started in 2007 at the Chair of Pattern Recognition and Image Processing [LMB] at the University of Freiburg, based on a collaboration with the Imaging Facility (now Life Imaging Center [LIC], located at the Center for Biological Systems Analysis [ZBSA]) of the Department of Biology of that same University. To ste… text/html 2010-05-05T21:20:17+02:00 http://www.xuvtools.org/doku.php?id=datasets&rev=1273087217&do=diff The following test data sets are provided in order to allow direct usage of XuvTools. We have tested stitching on these data sets and provide usage examples as well as run time measurements. If you want to quickly test XuvTools, download one or several of these data sets and give it a try. Note: due to traffic constraints we provide only small datasets in compressed Imaris format. Due to compression, these can take longer to load, which is not a limitation of XuvStitch. text/html 2010-07-18T00:21:46+02:00 http://www.xuvtools.org/doku.php?id=download-outdated&rev=1279405306&do=diff outdated versions current stable release XuvTools Version 1.6.0 XuvTools Version 1.6.0 (2009.11.05 / SVN r3048) Windows x32, static build, Qt-4.5.2 GUI xuvtools-1.6.0-r3048-win32.zip (8 MB) md5sum f0c507d007910a913a5b69e3de2c22c3 Windows x64, static build, Qt-4.5.3 GUI xuvtools-1.6.0a-r3048-win64.zip (12 MB) md5sum e74d620d5e656dbea3e19f7041332716 MacOS intel, app bundle, Qt-4.5.3 GUI XuvTools-1.6.0-r3048.dmg (11 MB) md5sum 15b6f3628fa113e06d524598be631ca8 text/html 2010-07-23T09:58:15+02:00 http://www.xuvtools.org/doku.php?id=download&rev=1279871895&do=diff We are currently in active development of version 1.8.0, which does not have a scheduled release date yet. Since beta-releases appear regularly, please check by often. 32-bit versionstesting purposes only! :!:use the 64-bit version:!: Latest Pre-release XuvTools Version 1.8.0-beta3 (2010-04-01) text/html 2010-08-28T16:17:16+02:00 http://www.xuvtools.org/doku.php?id=download_new&rev=1283005036&do=diff 32-bit versionstesting purposes only!:!:better use the 64-bit version:!: Windows Windows XuvStitch-1.8.0-Win32.msi 55 MB md5 e2e93a20f0a6aa4e54a8df7d0625de44 Windows XuvStitch-1.8.0-x64.msi 55 MB md5 68d43606156acc0b335a197faf9f00c8 Windows xuvtools-1.7.0-win32.zip 9 MB md5 81e01232cfbcfd0f3b19475f45695d15 Windows xuvtools-1.7.0-win64.zip 12 MB md5 64ff007a37335a9d830cfe2bcc14cbab Linux Apple MacOS X text/html 2010-07-22T18:28:22+02:00 http://www.xuvtools.org/doku.php?id=download_template&rev=1279816102&do=diff 32-bit versionstesting purposes only!:!:better use the 64-bit version:!: [STABLE_VERSION_PLACEMENT] [BETA_VERSION_PLACEMENT] Old Releases are provided on the download-outdated page. Use for reference only, bug reports for those versions will be ignored. text/html 2010-04-18T15:37:16+02:00 http://www.xuvtools.org/doku.php?id=faq&rev=1271597836&do=diff Input / Output File Support What input file formats are supported? XuvTools can read many input formats: BioRad PIC, TIFF, Metamorph STK (uncompressed and LZW compressed), Fluoview TIFF, Carl Zeiss LSM 5, PSIA TIFF, Nanoscope II/III, JPEG, PNG, BMP, IBW, OME and RAW. text/html 2010-01-06T23:38:28+02:00 http://www.xuvtools.org/doku.php?id=license&rev=1262817508&do=diff In case you have questions about this licensing, or want to obtain the software under a different license, please feel free to contact us via email. Commercially licensing is available upon request. See the Contact page for contact information. If you use XuvTools in your research and/or find it useful, you have to cite us. Look at the xuvtools-bibtex example on how to do that. text/html 2009-10-04T17:29:39+02:00 http://www.xuvtools.org/doku.php?id=links&rev=1254670179&do=diff Stitching with FiJi Globally optimal stitching of tiled 3D microscopic image acquisitions, by Stephan Preibisch, Stephan Saalfeld and Pavel Tomancak. Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, Dresden, Germany. text/html 2010-03-31T13:33:51+02:00 http://www.xuvtools.org/doku.php?id=navigate&rev=1270035231&do=diff Navigation: * Home * Screenshots * Download * Documentation * Support * FAQ * Development * Newsletter * Links * About text/html 2010-05-05T20:58:29+02:00 http://www.xuvtools.org/doku.php?id=screenshots&rev=1273085909&do=diff XuvTools Gallery Worm5 / C.elegans C.elegans worm from public available testdata (by Peter Meister, FMI Basel) worm5 stitched: [worm5 stitched] sxn3_w1RGB-488nm, sxn3_w2RGB-561nm / Mouse brain Mouse brain (by Dominique Spirig, FMI Basel) sxn3_w1RGB-488nm, sxn3_w2RGB-561nm stitched: text/html 2010-05-05T21:32:45+02:00 http://www.xuvtools.org/doku.php?id=server_datasets&rev=1273087965&do=diff File Formats and Folder Structure The folder structure on in the data set repository is depicted here: /data/xuvtools_img/BugListData - data sets belonging to a trac bugreport /data/xuvtools_img/FileFormats - data sets and documents for file readers /data/xuvtools_img/ReferenceData - data sets that are publicly available for testing /data/xuvtools_img/OriginalData - all other data sets (originals) that are available text/html 2010-06-22T10:11:47+02:00 http://www.xuvtools.org/doku.php?id=start&rev=1277194307&do=diff About: XuvTools (pronounced “ex-you-vee-tools”) is a fully automated 3D stitching software for biomedical image data, typically confocal microscopy images. XuvTools runs on Microsoft Windows XP and Vista, Linux and Apple Mac computers. It supports 32 and 64bit operating systems (with 64bit highly preferred). XuvTools is free and open source software (see Licensing), so you can start using it immediately. Go to Downloads and give it a try.<center><div class="progressbar" style="background-image:u… text/html 2010-06-18T21:59:54+02:00 http://www.xuvtools.org/doku.php?id=support&rev=1276891194&do=diff If you have a problem with XuvTools, this page should help you get in contact with the developers. Before reporting an issue, please make sure you have the latest version of XuvTools! Required for all Bug Reports! * The version number of XuvTools. The version can be found in the About-Dialog. * The operating system you are using (Mac Leopard, Mac Snow Leopard, ..., Windows XP, Windows 7, ..., Linux...) * A detailed description of the problem, i.e. * What did you do last in XuvTools b… text/html 2009-03-10T17:46:58+02:00 http://www.xuvtools.org/doku.php?id=xuvtools-bibtex&rev=1236703618&do=diff If you use XuvTools, you must cite the following paper: M. Emmenlauer, O. Ronneberger, A. Ponti, P. Schwarb, A. Griffa, A. Filippi, R. Nitschke, W. Driever, and H. Burkhardt. XuvTools: free, fast and reliable stitching of large 3D datasets. Journal of Microscopy, 233(1):42--60, 2009 text/html 2009-11-07T13:47:22+02:00 http://www.xuvtools.org/doku.php?id=xuvtools_website&rev=1257598042&do=diff Search Engine Optimization It might be nice to have a google Sitemap, even though I don't know what they are useful for: * <http://www.google.com/support/webmasters/bin/answer.py?hl=en&answer=156184> And how does none get the direct links below the google search result?